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A
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C
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D
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E
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F
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G
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H
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I
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P
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R
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S
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T
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V
A
allele_assignment (pyhml.models.typing.Typing attribute)
allele_db (pyhml.models.allele_assignment.AlleleAssignment attribute)
,
[1]
allele_version (pyhml.models.allele_assignment.AlleleAssignment attribute)
,
[1]
AlleleAssignment (class in pyhml.models.allele_assignment)
,
[1]
C
center_code (pyhml.models.sample.Sample attribute)
collection_method (pyhml.models.sample.Sample attribute)
Consensus (class in pyhml.models.consensus)
consensus_sequence (pyhml.models.typing.Typing attribute)
consensus_sequence_block (pyhml.models.consensus.Consensus attribute)
ConsensusSeqBlock (class in pyhml.models.consensus_seq_block)
continuity (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
create_seqrecord() (pyhml.models.typing.Typing method)
create_seqrecords() (pyhml.models.sample.Sample method)
D
date (pyhml.models.allele_assignment.AlleleAssignment attribute)
,
[1]
(pyhml.models.consensus.Consensus attribute)
(pyhml.models.typing.Typing attribute)
description (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
E
end (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
expected_copy_number (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
F
from_dict() (pyhml.models.allele_assignment.AlleleAssignment class method)
,
[1]
(pyhml.models.consensus.Consensus class method)
(pyhml.models.consensus_seq_block.ConsensusSeqBlock class method)
(pyhml.models.hml.HML class method)
(pyhml.models.sample.Sample class method)
(pyhml.models.typing.Typing class method)
G
gene_family (pyhml.models.typing.Typing attribute)
glstring (pyhml.models.allele_assignment.AlleleAssignment attribute)
,
[1]
H
haploid (pyhml.models.allele_assignment.AlleleAssignment attribute)
,
[1]
HML (class in pyhml.models.hml)
HmlParser (class in pyhml.pyhml)
I
id (pyhml.models.sample.Sample attribute)
P
parse() (pyhml.pyhml.HmlParser method)
phase_set (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
project_name (pyhml.models.hml.HML attribute)
pyhml.models.allele_assignment (module)
,
[1]
pyhml.models.consensus (module)
pyhml.models.consensus_seq_block (module)
pyhml.models.hml (module)
pyhml.models.sample (module)
pyhml.models.typing (module)
pyhml.pyhml (module)
R
reference_database (pyhml.models.consensus.Consensus attribute)
reference_sequence_id (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
reporting_center (pyhml.models.hml.HML attribute)
S
Sample (class in pyhml.models.sample)
sample (pyhml.models.hml.HML attribute)
schema_location (pyhml.models.hml.HML attribute)
seq_records (pyhml.models.sample.Sample attribute)
(pyhml.models.typing.Typing attribute)
sequence (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
sequence_quality (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
start (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
strand (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
T
tobiotype() (pyhml.models.hml.HML method)
toPandas() (pyhml.models.hml.HML method)
Typing (class in pyhml.models.typing)
typing (pyhml.models.sample.Sample attribute)
typing_method (pyhml.models.typing.Typing attribute)
V
variant (pyhml.models.consensus_seq_block.ConsensusSeqBlock attribute)
version (pyhml.models.hml.HML attribute)
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